rs51239212 SNP Detail

Summary

• ID
  rs51239212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127204478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTAAGCG TAGCTCACAG
  TCTTTAAAAA CCTAATCAGC ATTCTAAAGT TGGAGTTGGG GTTCCTGGAC TTTATATCTT
  CCTCTCCCTT CCCCAATGTG GCCAAATCAA TCAAATCTCC CTTTGTCTGC TTTTCACCAC
  TATTCCATTG TTCCTCTCTT TAGCCAAAAT ACTGGGATGG GTGGCCAAGC CTCACCTGTC
  R
  TGGTTGCTGG AGGCCAGGAA AAACCCTAGC AGAGAAAATT ATCCTCTTTA TTTTAACTTC
  CTATGCATTC GGGTCCCTAA AGCAGTTCAG GCATATATGT GGAAACAGTG AAAAAGCATT
  TGAACACCAT GCACCATGGT ATCATTTCTA GTGACTTAAA CCCCATGCCC TCAGAGACAC
  TACACAGTTT TTGATGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135862707	ENSMUSSNP383926	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320953877	CHEV_3_127113747	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51239212					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127204478 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	1914 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	1873 bp distal
Rr584774	regulatory region 584774	1280 bp distal
Tssr35571	transcription start site region 35571	1942 bp upstream
Tssr35572	transcription start site region 35572	1848 bp upstream
Tssr35573	transcription start site region 35573	1821 bp upstream
Tssr35574	transcription start site region 35574	1786 bp upstream
Tssr35575	transcription start site region 35575	1765 bp upstream