rs51239356 SNP Detail

Summary

• ID
  rs51239356
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135695746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GGGCTAAGAA TGGGTCCACC
  T
  TGATCCCTTA GGACGCAGAG AGGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145545585	ENSMUSSNP4026651	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319993152	CHEV_1_137664585	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51239356					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135695746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	1030 bp distal
Phlda3	pleckstrin homology like domain, family A, member 3	within coordinates
Rr372092	regulatory region 372092	1061 bp downstream
Tssr223	transcription start site region 223	1929 bp downstream
Tssr224	transcription start site region 224	1807 bp downstream
Tssr8974	transcription start site region 8974	1833 bp downstream
Tssr8975	transcription start site region 8975	1800 bp downstream
Tssr8976	transcription start site region 8976	1783 bp downstream
Tssr8977	transcription start site region 8977	1768 bp downstream
Tssr8978	transcription start site region 8978	1751 bp downstream
Tssr8979	transcription start site region 8979	178 bp downstream