rs51240384 SNP Detail

Summary

• ID
  rs51240384
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47011192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCTGGGC TGACATGGCA
  GCCGGGGATG CTGTTAATTT CACTGTTTAC AGAAAGAAGT CCGGGGTGAG TGGAGGCTTT
  TTTGGTGTTT TAAAGCCAGA TGGTATTTCC TGCCTTGATC AGCCTCGGAG CTTTGGTTCC
  CATGGCAACT CTGAAGTTCC ACCTACTGCA ACTTCCTCAT TCTCTGAGCT TCTTCCTCTT
  T
  CACCATAGTG GGGGGGGGTG GGGGGGGCAG GAGAATAAAG CCATTAACTA GTTTGTGTGT
  TGCACTTCTC AGCTGACACT GCGCTCCAGC TCCAGCGTGT ATGACCTCAG TCCTCGCTGC
  AACCTAGACA CAGAGCATCT GCTGTCTCTG TCTTGCACAG GGAAACCCAG GCTCCAGAGA
  CAGGTGATAT GTTTTGCTTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146270562	ENSMUSSNP2600443	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs51240384					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47011192 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	within coordinates
Rr367622	regulatory region 367622	455 bp downstream
Rr376427	regulatory region 376427	1468 bp upstream
Tssr37147	transcription start site region 37147	46 bp upstream
Tssr41615	transcription start site region 41615	385 bp upstream
Tssr41616	transcription start site region 41616	53 bp upstream