rs51240680 SNP Detail

Summary

• ID
  rs51240680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66999736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCCCTCT TCTGGCCTCT
  TCGGTCACTG CACACACACA TATGCATAAC ATTAAAAAAA CATGAAATAA ATCTTTTTAA
  AAAGAAGAAT TGTAATCTTG TCCTCATAGA ATTAGGTAAA AATATTAAAC AAATTACAAA
  ATAAGGAACC ATTTCTTTTC CTTTATCCTC AACTAAAACG CCATGGTATA GGCTGAACAT
  R
  CCCAAAGGTA CTTCTGTCCA TCACTTTAAT GTTTCAAACA TGTGCTCTAT GATTCTAAAC
  TGAGCATGCA TGTGTGTGTG TGCAAGAATG CACTCATTCC CACATGATCA AGTATGAGGA
  CCAGGATTCA CTCCCCACCA TCCACTTAGG GAGAAAAAGC ATGGTGGTGC CCGTTTGTAA
  TTCCAGTGTT GGGCACAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62440232	NES17246793	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51240680					SNP	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62440232	NES17246793	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66999736 () rs orientation: forward

Symbol	Name	Function Class
Adra1a	adrenergic receptor, alpha 1a	within coordinates
Rr290067	regulatory region 290067	within coordinates
Rr293226	regulatory region 293226	1465 bp proximal
Rr296052	regulatory region 296052	114 bp distal
Rr389792	regulatory region 389792	368 bp upstream