rs51240742 SNP Detail

Summary

• ID
  rs51240742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113394119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATCCACC CTTCTGATGC
  TTGCATTTGC TCATTCTTTC CCCATCTAAG ACCTGTCCAC AGTAACTCGT TCTTCTCTGC
  ACTGTCTCCT GACCTCCAGA AAGCTACCTT TCCTCTCAGA TCTACTCTTT TCTTCCTCAG
  ATTTCTCAAG CCTCTCTACT TCCTCATAGC TCAGGCTGCC CCTGGAGAGC TCCAAACAGA
  R
  GGTTTTTGTT GAGCCACGTG TCACCGTGGT CCCAGTTAGC ACTGTGGTGC TCCGCTTAGT
  CAAAACCTTG CACCAGTCAG AGACCACAGG GACTCTGAGG CTTAAACCTC ACACTAGCCA
  CAGAGTATGG GTATTCTGAT CCCCAATCTG CCAGTCATCT CTTGAGTCAG GGACCAATGA
  TTTCTCTCAA AACAGTCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742433	ENSMUSSNP5309163	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51240742					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113394119 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	29 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	666 bp upstream
Ighj2	immunoglobulin heavy joining 2	984 bp upstream
Ighj3	immunoglobulin heavy joining 3	1367 bp upstream
Ighj4	immunoglobulin heavy joining 4	1932 bp upstream
Tssr115504	transcription start site region 115504	259 bp downstream
Tssr118005	transcription start site region 118005	1952 bp upstream
Tssr118006	transcription start site region 118006	1921 bp upstream
Tssr118007	transcription start site region 118007	1875 bp upstream
Tssr118008	transcription start site region 118008	1848 bp upstream
Tssr118009	transcription start site region 118009	1837 bp upstream
Tssr118010	transcription start site region 118010	1699 bp upstream
Tssr118011	transcription start site region 118011	1601 bp upstream
Tssr118012	transcription start site region 118012	1366 bp upstream
Tssr118013	transcription start site region 118013	1351 bp upstream
Tssr118014	transcription start site region 118014	1247 bp upstream
Tssr118015	transcription start site region 118015	1151 bp upstream
Tssr118016	transcription start site region 118016	997 bp upstream
Tssr118017	transcription start site region 118017	657 bp upstream
Tssr118018	transcription start site region 118018	114 bp upstream
Tssr118019	transcription start site region 118019	58 bp upstream
Tssr118020	transcription start site region 118020	13 bp upstream
Tssr118021	transcription start site region 118021	90 bp downstream
Tssr118022	transcription start site region 118022	122 bp downstream
Tssr118023	transcription start site region 118023	287 bp downstream