rs51240909 SNP Detail

Summary

• ID
  rs51240909
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153441697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGGTAGGC ATGGGACACA CCCCTGTGAC CCCAGCCATC
  CAGTGATGGG AGTAAGAGGA GAGTGTATTA TTTCAGGATA AAAAGAAAGA ACAAGCCGGG
  C
  GGTGGTGGCA CACGCCTTTA AGCCCAGCAC TCGGGAGGCA GAGACAGGCT GGTCTACAAA
  GTGAGTTCCA GGACAGCCAA GACTATACAG AGAAACCCT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147998104	ENSMUSSNP4572491	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51240909					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153441697 () rs orientation: forward

Symbol	Name	Function Class
Gm75178	predicted gene, 75178	1405 bp upstream
Rr567695	regulatory region 567695	1679 bp distal
Rr567696	regulatory region 567696	1106 bp distal
Rr567697	regulatory region 567697	915 bp proximal
Rr567698	regulatory region 567698	1416 bp proximal
Tssr20902	transcription start site region 20902	1365 bp upstream