rs51241502 SNP Detail

Summary

• ID
  rs51241502
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125219599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGAGAAA ATTTATTTCA
  CCATATTTGA TTATAGCTTG TTCCTTATTA AAAAAAATCA TCAAAGTATA AAAGTTCACA
  AAAGTTAGCT ACGTGATTAG GCAAGCTGTG CATTAAGAAA AACACGAAAA CCTGTGCAAA
  AACAAATGCA AATTCTGACG CAGCAGACCA CATAAGCGAT ATACAATTAG CGGCTCCCTA
  W
  GAAAGTGAGA AATAGAATCG ACTAAAATGT ATTAGGTATG AAATTAAGAC TTAATTAATG
  TTTTAACATT AAGACTCCCT GATCTCTCCT AATGTCGACA GCATAGTCAT CTCAATAGAG
  TTACATTCAC TCTGTGGACT CATCTAGCTA GTACTATCCT TCCTCTTTAA TCTTTATGTG
  GAGAACAGGT GTGAGATTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135808274	ENSMUSSNP1053182	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320936340	CHEV_3_125128868	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51241502					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125219599 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	227 bp proximal