rs51241749 SNP Detail

Summary

• ID
  rs51241749
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64086345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATCCTAG AATTATCATC
  GTTTCCTCTT GCCTTGATGT TAAAACTGCT AGCAGATAAT GATGAGCGTG GGTAAAAACA
  CTCCCTGAGA CAAGGCAGTT CCTAAAGGTT AGTAGCATTC CTGTCCTTAC TAGGCTTAGG
  TATTTTGGGT ATTTTGGTTC CTGCCTGCAT AAGTAGCCTT TGCAGAGATT AAAGTCACTT
  S
  GAAAGTAGGT GACAGGGTGC TGAGATGAAT GCTATCCTAA AGCCTGTGGG GCCAATTTAC
  TGTGAGGGAT TACCAAGGGA CTGAAGAATC TCCATGCTCT TTGGGATTCC ACTTTGTTTT
  CAGATCGTGG GAGCTAAGCC CCTACTGGCC CTTCAGAAAA CAGCTACGAG AAAGTAAGCC
  CTCAGCCCGG CGCTGGTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61410340	NES16794828	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51241749					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61410340	NES16794828	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64086345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	113 bp proximal
Gm22455	predicted gene, 22455	1870 bp downstream
Rpl4	ribosomal protein L4	397 bp downstream
Rr368801	regulatory region 368801	190 bp upstream
Snapc5	small nuclear RNA activating complex, polypeptide 5	211 bp upstream
Tssr85601	transcription start site region 85601	1665 bp downstream
Tssr85602	transcription start site region 85602	1611 bp downstream
Tssr85603	transcription start site region 85603	1325 bp downstream
Tssr85604	transcription start site region 85604	1283 bp downstream
Tssr85605	transcription start site region 85605	707 bp downstream
Tssr85606	transcription start site region 85606	647 bp downstream
Tssr85607	transcription start site region 85607	208 bp upstream
Tssr85608	transcription start site region 85608	226 bp upstream
Tssr90132	transcription start site region 90132	1252 bp upstream
Tssr90133	transcription start site region 90133	684 bp upstream
Tssr90134	transcription start site region 90134	614 bp upstream