rs51242947 SNP Detail

Summary

• ID
  rs51242947
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:96083008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTATAT TAACAGAGTT
  AAAATGACTA TATAGCTTTT TAAGGTTGTT TTATTATATT TTAAGAAACT TTTTAATAAG
  ACTTTATTAG AGTTTAACGC ATTATGTTTA TTGGTACTAT GGGCATTTAG GAGACTCACA
  TGTGCACTGA AAGGCAACAA CTTGTTCAAA TACCAAATGA AATACAAAAT ACTATGTTGA
  W
  AACAATTTTT GACATGGGCT TACTACATAA CTTTGGCCTG GAATTCACCA CAAAGACCTG
  AATAGACTAA GATCTATATG CCTTTGTCTT CTATTAAAGA CATGTCACTC TATCTACTAA
  TACGTTTATT TAATGTTTGA TAATTGTATA AGTTCTCTAA CAGGAGGGCT GAAAACAAGA
  AAAGGTAAAA AGCATAAATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144978486	ENSMUSSNP3944869	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51242947					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:96083008 () rs orientation: forward

Symbol	Name	Function Class
Gm69977	predicted gene, 69977	717 bp downstream
Rr371742	regulatory region 371742	1021 bp upstream