rs51243025 SNP Detail

Summary

• ID
  rs51243025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167198036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAGCTGGT CACATGGAGA AAGCAGCAGC TACAGTCTGA
  GGGAGGCCAG GGCAGGAAGG TGTCACAGCA GAAACAGCAG CAGAGGACAG AACTGAGACA
  R
  AAGGACGATG TCTGTTAGGA TCCAGAGACA AGAAACAGCA GTCTCTGGTT GCTAGAAGAG
  TCAGAGAGCT GTCCTCCTTA AGACCAAGGG TCTTACATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60342654	NES15844363	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	A	A	G	A	A	G	A
ss146037735	ENSMUSSNP2456553	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51243025					SNP	A	A	A	A	A	A	A	G	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60342654	NES15844363	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167198036 () rs orientation: forward

Symbol	Name	Function Class
Aldh9a1	aldehyde dehydrogenase 9, subfamily A1	1936 bp downstream
Mgst3	microsomal glutathione S-transferase 3	1499 bp downstream
Rr396523	regulatory region 396523	264 bp downstream
Rr422697	regulatory region 422697	455 bp distal
Rr422698	regulatory region 422698	382 bp distal
Rr422699	regulatory region 422699	325 bp distal
Rr422700	regulatory region 422700	within coordinates
Rr422701	regulatory region 422701	31 bp distal
Tssr14852	transcription start site region 14852	1950 bp downstream