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rs51243110 SNP Detail
Summary
  • ID
    rs51243110
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:116697932 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGATTAGAGA TCTCATTTAT
    TTTTCCTTTG TGGAGCTGAA ACGACATCTT ATGTCCTGTT TCAGCCGTGA GATCAGTCCT
    TATAGGAGCT AGAACAAAGC TGCGAATCTC TCAGTTGCTA AACCTCACCC TTGTGAACGG
    ATCCAGCAAG TGTTCTTGTC TCTTGAAGAT ACACTAACAT GGATGGGTTC CTTTGGAAGA
    Y
    ATCCCTGGTG CTCTAGTGAC AGCACAGGCC GTGTGTTTCC TCCTACTCCG TATTTTCTAT
    CTCTGCTGTG AGGACTTACA GCCAGTGGGT GGCGCTGTAA TACCGGAGGA CTCATTTGTT
    CTGTTGCCAC TAAGTGTTTT TATTATGGGA CTATTTCCTT ACATCATATG CTCTGAATTC
    TCTCTCTCTC TCTCTCTCTC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60435750 NES15935108 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51243110 SNP C C C C C C T C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60435750 NES15935108 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:116697932 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13742 CpG island 13742 1840 bp proximal
Frrs1 ferric-chelate reductase 1 mRNA-UTR
Noncoding-Transcript-Variant
Rr583800 regulatory region 583800 within coordinates
Rr583801 regulatory region 583801 142 bp distal
Rr583802 regulatory region 583802 78 bp proximal
Rr583803 regulatory region 583803 1685 bp proximal
Tssr31391 transcription start site region 31391 677 bp downstream
Tssr31392 transcription start site region 31392 595 bp downstream
Tssr31393 transcription start site region 31393 568 bp downstream
Tssr31394 transcription start site region 31394 531 bp downstream
Tssr31395 transcription start site region 31395 81 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory