rs51243162 SNP Detail

Summary

• ID
  rs51243162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47867355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGACAG TCTTAGCTCA
  AATGTCAGAA CTCACATGGA GGAAGAAGAG AATCAACCCT ACAGTATTGT CTTCTAACCT
  GCTCTCTGTG GTTCATACAG GCTGGACACA CACACAGTTT TGTTTTGTTT TGTTTTGTTT
  TGTTTTGTTT TTTTCTGAGA CAGGGTTTTC TCTGTGTTGC CCTGTCTGTC CTGGAACTCT
  Y
  TCTGTAGACC AGGCTGGCTT GGCATTTCAG AGATCTGCCT GCTTCTGCCT CCTGAGAGCT
  GGGATTAAAG GCATGTGCCA CCACTGCCAG GCTTCACACA CAATTTTTTT AAAAGTATAA
  TGTATGATAT GAATTACTCC AAGTCTATTC TATACAGAGA ACCGTGGGAC GCCAATAGGC
  CAGACATGAT GACACATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145707991	ENSMUSSNP4302237	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51243162					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47867355 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335190	regulatory region 335190	1555 bp distal
Rr335191	regulatory region 335191	955 bp distal
Rr335192	regulatory region 335192	355 bp distal
Rr335193	regulatory region 335193	within coordinates
Tssr144956	transcription start site region 144956	1089 bp upstream
Tssr144957	transcription start site region 144957	1174 bp upstream
Tssr144958	transcription start site region 144958	1270 bp upstream
Tssr144959	transcription start site region 144959	1287 bp upstream
Tssr144960	transcription start site region 144960	1357 bp upstream
Tssr144961	transcription start site region 144961	1398 bp upstream
Tssr144962	transcription start site region 144962	1416 bp upstream
Tssr144963	transcription start site region 144963	1477 bp upstream
Tssr144964	transcription start site region 144964	1975 bp upstream