rs51243820 SNP Detail

Summary

• ID
  rs51243820
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72346127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCGGAGG AGGAGGTTTA
  AAGCCAACCG AGATGGTAAG CAGCTCGGAG GCCGGGGGAA GGGTCGGTCA GGGACTTTCA
  AACTGTTTAT TTGTAGTCTT GAGCTCTCTG AAATACAATT TGAAGTGCGT AATCCGAGAG
  GTCAGTGAGA AACTTCGATT TGCTTACTAG AAGGTTCTGG GTTTTTTTTT TTTTTTTTTT
  T
  CAGGAACACT CCAGGCATTT CTGCACCTTT CCCCCTCTCA TCGAAATAGA TACATCTTTA
  AATCTGCTCT GTTGTGGGTG GGGGGAAAGG CAACTCTCTG GTGGTAAAGC TGCAGCTGGA
  GAGCATCCGC ATCGCACTCA CTGACGCTGT TGAATTTTAA TTTAACTTTT CCTGCTTCCA
  CTACAAAACA GGGACTATTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136621047	ENSMUSSNP1897784	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323002365	CHEV_9_72286652	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51243820					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72346127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	123 bp distal
Gm36948	predicted gene, 36948	1915 bp upstream
Mns1	meiosis-specific nuclear structural protein 1	within coordinates
Rr401506	regulatory region 401506	166 bp downstream
Rr682742	regulatory region 682742	300 bp distal
Rr682743	regulatory region 682743	within coordinates
Rr682744	regulatory region 682744	1356 bp proximal
Rr682745	regulatory region 682745	1986 bp proximal
Tssr85997	transcription start site region 85997	829 bp downstream
Tssr85998	transcription start site region 85998	312 bp downstream
Tssr85999	transcription start site region 85999	267 bp downstream
Tssr86000	transcription start site region 86000	247 bp downstream
Tssr86001	transcription start site region 86001	229 bp downstream
Tssr86002	transcription start site region 86002	within coordinates