rs51244844 SNP Detail

Summary

• ID
  rs51244844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72688990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTAGATCAAA
  GAGTTTCATT TGGTGTCTGT CCTTCCCTCT TCTTCCTCCC CAACCCCCAT GCCAGATCTG
  TTTGCAAAAA GCTCAGATCT TTTTTTCCCA CACATAGACT GACCTGATAG TGGAGGAATG
  AGTGGGGGAG GGGCTGCTCT GGTATGGAGT GGAGCCTATC CTACACCAGC GCTCCCTGAT
  Y
  GAAAGAAAAT TCTGGTAGGA AGAGAGACTG CACACTCCCC ATACGGAAAG GAAGTATGAG
  AAATAAGACA AGCCTCCATT TTTGTATTTT AAGGGCACAG AGCAGAAGCA TCATTCTCAA
  GGCTGTGCCC ACGACCACAG CACTTTGTAG AGCAGGAGAC AGTGAGCGCT TGGCCGTTCC
  AGGTGTTGGC CTGAGTTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61421308	NES16805477	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51244844					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421308	NES16805477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72688990 () rs orientation: forward

Symbol	Name	Function Class
Gm68819	predicted gene, 68819	318 bp downstream
Rr197252	regulatory region 197252	1590 bp distal