rs51245065 SNP Detail

Summary

• ID
  rs51245065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75140457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTGGAA CAGACCAGAG
  AGAGTGCCAG CAGTGGAAAA GGCACTGATG CCACCCCTGG CCATCAAGAC AAGCCTCTGC
  CTTCAATTCC AAGCTCCAGT GTGAGCCTTG ACTTCCTTTC CTGTTTCAAG AAACCAGAGA
  GGCCCACTTT GGATTTCCAG GAACCTGGAA GCACGCATAC TTCCCGTCAC CCTGGGCTCT
  Y
  GAAGTCAGAT GACCCCTTTT AGCCTGTTAC AATTTCCCAG CCAGGATGTC ACCAGACAGC
  GTATTTTCCT AGCCTTGCAA GATGCAGTTG CTCTTCCTGC GGCTTCCAGA AAGGCCTGCC
  GACAGAAAGG TCCCCAGCAG TCCTTGTCCT CAGAGCCAAA CCCGTCCTGC AGGCCCTCAG
  GACAGTTTTG ATCACCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61181999	NES16686053	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51245065					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61181999	NES16686053	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75140457 () rs orientation: forward

Symbol	Name	Function Class
Gm52777	predicted gene, 52777	411 bp downstream
Rr613376	regulatory region 613376	within coordinates
Tssr46681	transcription start site region 46681	82 bp upstream