rs51245856 SNP Detail

Summary

• ID
  rs51245856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87455506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGACAAG ATCAGGGCTC
  GCCTTGGGAG GCGTGGAAGA AAGGACAGGC TTCATGTAAG GAATTCTGTG GAATTACAAA
  ACCAAGAACA CTGTGACTTA TGAAGAGTTC CATACTTTCT AGTCACTGCT CTGAGCATTG
  TGGAGGACTA TAATCATATC TCTAGGCCAC ATCCCAAGAG ACCATAGTGT TGCCAGAGAG
  Y
  ACCCATCTAC CTTGTGAATT ATGAGAACAC TGGAAGTTAC ACTGTCACCT TCTCTCCAGC
  CTCTGTCCTT TCTCCTATTT TATTGGTTCA CACCTAAGGC AAAAACTCTT TGCTCTGTTG
  GATGGCTTTT TGGGATTGTC CCCATTCTGC AGATGAGAAA AATGAGGCAT GGGGAAACTA
  ATACAATACC GTTGGCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61664513	NES17606428	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51245856					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61664513	NES17606428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87455506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4942	CpG island 4942	426 bp distal
Gm33444	predicted gene, 33444	within coordinates
Rr268858	regulatory region 268858	1496 bp proximal
Rr387583	regulatory region 387583	1963 bp upstream