rs51246251 SNP Detail

Summary

• ID
  rs51246251
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81333275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTATTGCA ACTTCAATGG
  ATTTGACTAG TCCCTGTGTC TTGGGGTAAG TTAAGATGTG AATTAAAATT ATATGTCACT
  CACACCTCTA GAAATACAAT AAATAAGAAA TAAAAGACCA GACACTGCCA CCCACCCACT
  GGCAGCCACA GGTGGGAATT TGATATGCAA ACTGGCATGA ACTGACTTTG AGTAAGATTC
  K
  CGACTGGTGA GTGCTGGCTT TCGAAGCCTG TGGAGAACTT GGGGATGGTG CCTTCTCTGA
  AGACCATTTG CCTTAGGTAA GAAAACAGAT TCTAAGACTC AAACTTGTGG TCCTTTCCCC
  CGGGTGAGTG ATAACTGCCA ACTGTATACC GAGGCCACAG ACAATCAGAA CTGAAAGTGT
  AGAAAAGAAA ACAGATGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292408	NES16908889	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51246251					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292408	NES16908889	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81333275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	784 bp distal
Cpgi1994	CpG island 1994	1079 bp proximal
Ncln	nicalin	1049 bp upstream
Rr402085	regulatory region 402085	856 bp downstream
Rr435684	regulatory region 435684	1126 bp distal
Rr435686	regulatory region 435686	559 bp distal
Rr435687	regulatory region 435687	985 bp distal
Rr435688	regulatory region 435688	1960 bp proximal
S1pr4	sphingosine-1-phosphate receptor 4	306 bp downstream
Tssr98629	transcription start site region 98629	1117 bp upstream
Tssr98630	transcription start site region 98630	1054 bp upstream