rs51246969 SNP Detail

Summary

• ID
  rs51246969
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76557950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGAGGAT GCCCGTCGGT
  CACCACGATC AAGTACTTGT TCTCCTTCAG GTGGGAGCCC CTGGAGAGGC GAGCATGGTG
  AGGAGCTTCT CTAGGCTCAG AGCCTGGGAA CCAGAGCTGA GGCCCAGGAG AAGAACCCAA
  GGCAGCTCTG GGCATGCTGT CTGTCCCCTG TCACCCAGGG ACCAGGTTTT ACCACTGATC
  M
  CAATTATAAA GTATCCGGTC TCATGGGGTT ACATGTCTGC AAGTATCACT TCAAGATACA
  CACTTTCAGG AAAGACACTG GCCCTCAGCT TGCAACCCCT AAATGGGCAT CATCTCAAGA
  TGCCTTGGAC CCCAAATCTC TGAGAACAAG AGGCCCGGGG TGACCCTGGG CTACCTGGGT
  AGTCCTGTGG AAGGTAATTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288915	NES16903795	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51246969					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288915	NES16903795	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76557950 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Cpgi1751	CpG island 1751	1226 bp proximal
Tssr94199	transcription start site region 94199	217 bp downstream
Tssr94200	transcription start site region 94200	182 bp downstream
Tssr94201	transcription start site region 94201	1372 bp upstream
Tssr98203	transcription start site region 98203	643 bp upstream
Tssr98204	transcription start site region 98204	135 bp upstream
Tssr98205	transcription start site region 98205	1302 bp downstream
Tssr98206	transcription start site region 98206	1345 bp downstream