rs51247651 SNP Detail

Summary

• ID
  rs51247651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTCTGG TAATGTACTG
  AACACATACA TAGCGCAGTT ATAAGAAATG TATGAGACCT TCCTTGTCTT TGCTCTGTGT
  GTAAGACGTG TCCCCTGCAC CTGTATAGTG GCTGTGGCTT GAATGACTCT CAAAGTTACT
  TCTATACATA CCTCTATGTC CATTATCGAA TCAGCTCTTC TGACAATTGG AAAGAACTCC
  Y
  ATTCTAAAAG GCAATGGATT CCTTAGATCC TTTCACCTTA TTGTATCCTT GTAGGGAAAT
  GCAAAATTTT AGAAACGATT CTAATAAACG AATCTTCCTA AGTAAATCCT TTTCAATTTC
  TTTTAATATT CGAGATTTGA ACTTATGTGT TGGATTTGTT AGTTGCTATT TGTCTATGTA
  ACCGCCTTGT GTCCATTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014978	ENSMUSSNP6961358	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51247651					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	314 bp proximal
Met	met proto-oncogene	799 bp upstream
Rr626799	regulatory region 626799	309 bp proximal
Rr626800	regulatory region 626800	473 bp proximal
Rr626801	regulatory region 626801	516 bp proximal
Rr626802	regulatory region 626802	1048 bp proximal
Tssr55050	transcription start site region 55050	431 bp upstream
Tssr55051	transcription start site region 55051	554 bp upstream
Tssr55052	transcription start site region 55052	748 bp upstream
Tssr55053	transcription start site region 55053	825 bp upstream
Tssr55054	transcription start site region 55054	884 bp upstream
Tssr55055	transcription start site region 55055	900 bp upstream
Tssr55056	transcription start site region 55056	926 bp upstream
Tssr55057	transcription start site region 55057	1091 bp upstream
Tssr55058	transcription start site region 55058	1131 bp upstream
Tssr55059	transcription start site region 55059	1170 bp upstream