rs51249017 SNP Detail

Summary

• ID
  rs51249017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:121332692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTAAAATAA ACTATAAGAG TCCCACATTG AGAACTCATT
  GGTTTCCAAG CCATTAGCAA TATGGGGGCC GGGTGTTTCC TACTCTTCTT GGCATGTGTG
  Y
  ATGTGTGCAT TTGTGTATCT GTCTCCATTA TGTACGACAG GGTTACATAT TCTTATGACA
  TGCCTGTTGT ATTTAAATAA GACACGAAGA AGAGTTCCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60935902	NES16198332	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51249017					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60935902	NES16198332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:121332692 () rs orientation: forward

Symbol	Name	Function Class
Slc6a12	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	within coordinates
Tssr58613	transcription start site region 58613	668 bp upstream
Tssr58614	transcription start site region 58614	1056 bp upstream
Tssr58615	transcription start site region 58615	1085 bp upstream
Tssr58616	transcription start site region 58616	1139 bp upstream
Tssr58617	transcription start site region 58617	1146 bp upstream
Tssr58618	transcription start site region 58618	1165 bp upstream
Tssr58619	transcription start site region 58619	1190 bp upstream
Tssr58620	transcription start site region 58620	1782 bp upstream