rs51250397 SNP Detail

Summary

• ID
  rs51250397
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40988603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCTCTA CCACAACAAC
  AGAAATGTAA CTAGCACACC CCTAAGATTT CCAACCCTAA CGTTATTCCA CCTTCCTAAC
  AGGGTACAGA AGGGCACGAG TCTTACTGAC AGATCGCAGG TGTGTATGTC CGAGGAGAGG
  GGAGGTTGAC AGAAGAGTTT GGGTTAGAAT CTGAAAACTC AGGCGAAGAA GCATGCCCCC
  M
  CCCCCACCCC TGAAAACCCC TAGGGTCTCA CGGTTCTGCT GAGAGTCAAC ATTCTAGCAA
  GGCAGAATTG AAATGGCACC TGCCAGGAGA ATTCAGCAGA CTCCAGGCTC TCAGCTTCCC
  CAGACTCGGT TCACAAGATG CCTCAGAGAA GAACAGTGTC TCCCGGGCTG TGCTGCAGAA
  CGATGGGTGG ATTTAGTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136344777	ENSMUSSNP3231875	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
ss322922263	CHEV_9_40885390	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51250397					SNP	C	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40988603 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr138	DNA Segment, Chr 9, Derry C. Roopenian 138	595 bp distal
Rr206246	regulatory region 206246	1997 bp proximal
Tssr88989	transcription start site region 88989	1585 bp upstream
Ubash3b	ubiquitin associated and SH3 domain containing, B	within coordinates