rs51250642 SNP Detail

Summary

• ID
  rs51250642
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134483147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG GTCTCACACC CAGTTACACC
  G
  ACGGTGTACG GTTTTCTGCC TTGCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145508252	ENSMUSSNP1671777	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss319983146	CHEV_1_136451986	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51250642					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134483147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	764 bp proximal
Gm57134	predicted gene, 57134	707 bp downstream
Rr367005	regulatory region 367005	1551 bp upstream
Rr418945	regulatory region 418945	within coordinates
Rr418946	regulatory region 418946	561 bp proximal
Rr418947	regulatory region 418947	1004 bp proximal
Rr418948	regulatory region 418948	1683 bp proximal
Tssr13798	transcription start site region 13798	1578 bp downstream