rs51250782 SNP Detail

Summary

• ID
  rs51250782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:123502985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGCTGAC TGAGCTAAGG
  GAGTGACATA ATGTCCAAGC TCCCTGGACT AAATTTAGGC CCCGGGAAAA TAATTTCCCT
  TGGGTGAGTT CCAGAAGCAC TAGGGCGCTC AGAGAACAGG CTGCTGTCCT GAGCCCTCAG
  GCCTGGCTCT CAAGGAAGCC TCGAGCCTGG GCATGCCTCT GCCAGCAAAT GGGCATCGTG
  R
  TCCTCTGAAT CAATCCCTGG TGACTGCCTG CCTTGGGAGT GGTAAACCAA CCTACCCTCC
  CTCTCATCTG CAGCGCCCAG TACATGTGGA AAACAAGCTG CCGCAGAGGC AGAGACAGCG
  AGAAGGCAGA CTTGTTAGTT TAGCTCTCTG TTACAGCAAA CAAATCGATT ATGAAATAGA
  ATACAGAATT ACATGGTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60834531	NES16021149	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51250782					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834531	NES16021149	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123502985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830487J09Rik	RIKEN cDNA 5830487J09 gene			1550 bp upstream
Bcl7a	B cell CLL/lymphoma 7A			Intron
				Noncoding-Transcript-Variant
Rr378576	regulatory region 378576			within coordinates
Rr620178	regulatory region 620178			within coordinates