rs51251341 SNP Detail

Summary

• ID
  rs51251341
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114293367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGACAA TCTTGTAATG
  TCGCTCACCT AGAGGCCACC TGCACCCATT GGTGGGAACA TTTTGAACAG ATTCCAGAGA
  AGCCGGCTTA GGCAAGGAGA ACGGTTGCAT GAGTGTGAAG TAGGTTTAAG TACGGACGTG
  TAGCAAGCCA GGAGGAGGTG GCTTTCTGTG CTGGCAAACC CCAGATTATG GAGAGAGAGC
  M
  AGGTGAGGGC TGAGCCAGCG CCAGGACTGT GGTGGCAGGT AAGTAAGTGT GCTGCAGGGA
  ATTCCAACTC CTGGTGCCTC CTCTGAGCAC TGGCCAAGCC CCTCCCCTGT GGCCTGATAC
  AGCACACCAC AGCCTCCTGC TGAAAGGTGA CACTCAGAAG GCCGGGCTCC CTTAGTCACC
  CTGTGGGCAC TTGTGAGACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60825948	NES16029823	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51251341					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60825948	NES16029823	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114293367 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	167 bp distal
Rr120008	regulatory region 120008	1567 bp proximal
Rr120009	regulatory region 120009	1939 bp proximal
Tssr48071	transcription start site region 48071	120 bp upstream
Tssr48072	transcription start site region 48072	147 bp upstream
Tssr48073	transcription start site region 48073	165 bp upstream