rs51251592 SNP Detail

Summary

• ID
  rs51251592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:106741867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCAGCCT CCCCGGAGTC
  CGGAGCCACA CCGCCTCCAC CATGAACTGC ATCCTTAAAC CATGAGACAG AATAAACCCT
  TCCTCTATTA GAAGTTGCTT TTTAGTCAGT GATTTCATCA AAACAAGGAA ATGAACGAAT
  GAGTACTGGA TTTACCAGCT TAATGTTTTG CATCCCAGTT TCCCCGGTCT CATTTCCTCA
  Y
  GGCAACTTAA TGATTACTTC AGTTTCTCTT GGAAATCACT TAGGCTATCA CAGTTTCTAG
  AAGATCCAGC CATGTTCTGG GCCACCCTTG CCAACCCTAC AGTGACTCTA TCTGCCATTC
  ACCCTCAGGC TATTTAAAAC AGCATCCTCT GTGGGCTTGG GAGATAGCTG TAGTGCATGC
  TTGCAAATGG GAAGGATATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61212627	NES16721112	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	T	C	C	C		C	C	T	C		T
ss149009031	ENSMUSSNP623628	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321634740	CHEV_5_107023020	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51251592					SNP	T	C	C	T	C	C	C	T	C	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61212627	NES16721112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:106741867 () rs orientation: forward

Symbol	Name	Function Class
Gm28039	predicted gene, 28039	within coordinates
Rr616368	regulatory region 616368	577 bp proximal