rs51253995 SNP Detail

Summary

• ID
  rs51253995
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74113816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA AATCTAAATC ACTTTTCTTT
  W
  AAAAAAAAAA AAAAGAAAGC TGTAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145938526	ENSMUSSNP2331095	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51253995					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74113816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	1318 bp distal
Ehd3	EH-domain containing 3	within coordinates
Rr530824	regulatory region 530824	1970 bp distal
Rr530826	regulatory region 530826	137 bp distal
Rr530827	regulatory region 530827	517 bp proximal
Rr530828	regulatory region 530828	1358 bp proximal
Tssr145810	transcription start site region 145810	1982 bp downstream
Tssr145811	transcription start site region 145811	1950 bp downstream
Tssr145812	transcription start site region 145812	1920 bp downstream
Tssr145813	transcription start site region 145813	1880 bp downstream
Tssr145814	transcription start site region 145814	1865 bp downstream