rs51255998 SNP Detail

Summary

• ID
  rs51255998
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:130535274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGGATA ACAGAGAATC
  TGCTTGGGGT GGTGACTGTT GGGAAGCCAT TTTGCTCATT GTCAAGCCTA GAGGGCTTCT
  CATTGGCAGT TAGGGCTAAG TATGGAGTGA TGGGAAAGAG TTCAGAGACA ATCTTTTGTC
  TAAATGACAT CATTGTGTGG GATGGACCTT GTGGCCTGAA AAAAAAAATC TATGATGAAT
  S
  TGGTTGCCTT GGATACTGAT TGGGAGATAA ATTTATTTTT CTTAAAATCT ATTGTTGGAA
  TCTTCTTGTG ATGGCATATG CCTGTCTACA CTCAACTGAG GCAGGGGGAT GGAGCGTTGA
  TTAGCTAGGA CTAGGTGTGG GAAGGAGAGA GGGAGGCCAG GGTCAGTGTG GACTATTATA
  ATGAGTTGCT GTCTCAAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60841591	NES16009773	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs51255998					SNP	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60841591	NES16009773	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:130535274 () rs orientation: forward

Symbol	Name	Function Class
Caln1	calneuron 1	within coordinates
Rr378636	regulatory region 378636	245 bp downstream
Tssr49069	transcription start site region 49069	1656 bp upstream