rs51257858 SNP Detail

Summary

• ID
  rs51257858
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73187726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGACCAAAA TTCCCTTCCT
  CTGCCCCGCC CCCGGCGCTA GCCGAGCCCA TAGAGGAAGC AGCAGACCGA CGCACGAGGC
  CACGCGTCAC CGCGTTCTCC CGCCCACTCC GTCTGACGTC AAGGGGCGGG ACCAGCCCGA
  CGGCGCCACC GTTGACCCTG CTGTTACCAG GCGCTCACAC AGCCAATCAG CACTCGCCGC
  M
  AGCGCCGGCC GGCCTTTGAA CTCCGCACAG CAACTTCCTG CTGTTTGGCG AGTACACAGT
  GCAATGCAGT ATGTCTGTCA GCGCTGCGGC ACAAAGGAAC AGCCATTTTG TGACTGAGCT
  GGACTTGCAC CAAGATGCCA GGGCCTCCGA GAACTGCTGC CTGCGCCAAC TACCGAGCTG
  CCTTTTATTT CATCATCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61020030	NES16105280	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51257858					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020030	NES16105280	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73187726 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	1820 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	within coordinates
Gm44686	predicted gene 44686	within coordinates
Rr167998	regulatory region 167998	1925 bp distal
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	within coordinates
Tssr67202	transcription start site region 67202	8 bp downstream
Tssr67203	transcription start site region 67203	33 bp upstream
Tssr67204	transcription start site region 67204	86 bp upstream
Tssr67205	transcription start site region 67205	1386 bp upstream
Tssr72947	transcription start site region 72947	212 bp upstream
Tssr72948	transcription start site region 72948	1282 bp downstream