rs51257882 SNP Detail

Summary

• ID
  rs51257882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59241158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCTAAA GGATGCTCTA
  AACATAAATC TTTTTAAAAA AATTTTTAAA TCAACAAAAA TAATAGTGGC TACTTATGGA
  GAAGCCTGGT GGTTTCATCC ATGATGGAAA GGTTCGATGC ATTGGCCACG CCTCCCACAG
  ACTTTCCTTT TATTCGTGGT GGGAGTGTTA AAAGTCTGTG CTCTGGGGGG TTTGAGATTG
  R
  GTTACCTTTC TCACTGCACG TTTGCTAGAA ATGATTTAAG GAAGGAAGGG GCTTATGTGG
  CTCGGGGTTT CAGAATGTCT CTGCCTATCA TGGAAGGACG CTAAAGAAGC AACTATAGGC
  AGTGGGAGCC AGAAGTGGAG CCTGGTTCAC CAGGCAACAT TGGCAAGCAG AGAGAGCTAA
  GCTGGGTGTC GCCTTCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52330493	NES15283262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51257882					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52330493	NES15283262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59241158 () rs orientation: forward

Symbol	Name	Function Class
Pla2g12b	phospholipase A2, group XIIB	within coordinates
Rr215348	regulatory region 215348	1443 bp proximal
Rr224847	regulatory region 224847	157 bp distal
Tssr93483	transcription start site region 93483	1903 bp downstream
Tssr93484	transcription start site region 93484	1667 bp downstream
Tssr93485	transcription start site region 93485	1649 bp downstream