rs51258019 SNP Detail

Summary

• ID
  rs51258019
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101831823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT GGGTGCGGCG CGGGCGGCCA
  S
  GGCGACTCAC GGGAGGGGCC GGCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320853501	CHEV_3_101728430	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51258019					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101831823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13622	CpG island 13622	within coordinates
Rr76960	regulatory region 76960	within coordinates
Slc22a15	solute carrier family 22 (organic anion/cation transporter), member 15	54 bp upstream
Tssr34811	transcription start site region 34811	292 bp upstream
Tssr34812	transcription start site region 34812	208 bp upstream
Tssr34813	transcription start site region 34813	99 bp upstream
Tssr34814	transcription start site region 34814	53 bp upstream
Tssr34815	transcription start site region 34815	15 bp upstream
Tssr34816	transcription start site region 34816	1 bp downstream
Tssr34817	transcription start site region 34817	17 bp downstream
Tssr34818	transcription start site region 34818	122 bp downstream