rs51258108 SNP Detail

Summary

• ID
  rs51258108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:48162247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTCTCAA GAAAATATAT
  CATCAGTTTT CATTTGCTCT GTTTTATGGA GGTACTGGAA ATTCAACTCA GGGCCCTGCA
  CACTAAGTAA GCATTCTACC ACCTACCTTT TCCTTGGTGA AGGGGTTTCT CAGAGCCACC
  TGTCTCTGCC TTCAGAGTGC TGAGATTAAA AGCATGCACC ACCAACACTA TCACAGGACT
  Y
  ATATCCCAGA GCCTTTTTCT TTTCAGACAG ACATCGTCTC AAACTGCTCT AGTGCTCAAA
  GGCCTTAGCT CTTCTTGACT TAGCCTGTCA AGTAGCTGAA ATTATAGGTC TATGAGAGCA
  CACATTCTTC CACATCAAAA GATTATTATT TAAAGGATTT TCAATATAAA ATGCCTTTAT
  AAATTTGTTT AAAACAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60606896	NES16304480	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51258108					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60606896	NES16304480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:48162247 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2aip	CDKN2A interacting protein	132 bp downstream
Rr663260	regulatory region 663260	1858 bp distal
Rr663261	regulatory region 663261	626 bp distal
Tssr81246	transcription start site region 81246	1408 bp downstream