rs51258619 SNP Detail

Summary

• ID
  rs51258619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATCGCTAT TTTGTGCAAT TAACTCAGTA ATATTTATCT
  TAAACACCAT AGAGGCAGTA ATTAGGCTCA TACACTAGGA CTGCATGTGA AAAGTCTTGA
  Y
  GGTCAAGCCT TACTAACATG CATTAATTTT TAAAACAATA AAAATCCCTT TGTGGAGCCA
  ATTTACATTC CCGAGTTCCC TGCCTTTGCT GGAAAGTTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61262563	NES16880291	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51258619					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262563	NES16880291	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790473 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	632 bp downstream
Med23	mediator complex subunit 23	1115 bp downstream
Tssr92746	transcription start site region 92746	1045 bp upstream
Tssr92747	transcription start site region 92747	1118 bp upstream
Tssr97085	transcription start site region 97085	917 bp downstream
Tssr97086	transcription start site region 97086	963 bp downstream
Tssr97087	transcription start site region 97087	997 bp downstream
Tssr97088	transcription start site region 97088	1055 bp downstream
Tssr97089	transcription start site region 97089	1074 bp downstream
Tssr97090	transcription start site region 97090	1105 bp downstream
Tssr97091	transcription start site region 97091	1496 bp downstream
Tssr97092	transcription start site region 97092	1516 bp downstream
Tssr97093	transcription start site region 97093	1540 bp downstream
Tssr97094	transcription start site region 97094	1556 bp downstream
Tssr97095	transcription start site region 97095	1570 bp downstream
Tssr97096	transcription start site region 97096	1835 bp downstream