rs51259000 SNP Detail

Summary

• ID
  rs51259000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGC AGGTCCTCTA AACAGTAATC
  Y
  ATTCACTCTA AAAATCTGTA GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135158419	ENSMUSSNP6930773	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320757164	CHEV_3_50171132	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51259000					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321659 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	780 bp upstream
Tssr33102	transcription start site region 33102	757 bp upstream
Tssr33103	transcription start site region 33103	683 bp upstream
Tssr33104	transcription start site region 33104	669 bp upstream
Tssr33105	transcription start site region 33105	585 bp upstream
Tssr33106	transcription start site region 33106	564 bp upstream
Tssr33107	transcription start site region 33107	539 bp upstream
Tssr33108	transcription start site region 33108	469 bp upstream
Tssr33109	transcription start site region 33109	411 bp upstream
Tssr33110	transcription start site region 33110	344 bp upstream
Tssr33111	transcription start site region 33111	322 bp upstream
Tssr33112	transcription start site region 33112	283 bp upstream
Tssr33113	transcription start site region 33113	239 bp upstream
Tssr33114	transcription start site region 33114	190 bp upstream
Tssr33115	transcription start site region 33115	150 bp upstream
Tssr33116	transcription start site region 33116	238 bp downstream
Tssr33117	transcription start site region 33117	468 bp downstream
Tssr33118	transcription start site region 33118	495 bp downstream
Tssr33119	transcription start site region 33119	521 bp downstream
Tssr33120	transcription start site region 33120	1071 bp downstream
Tssr33121	transcription start site region 33121	1364 bp downstream
Tssr33122	transcription start site region 33122	1458 bp downstream