rs51259581 SNP Detail

Summary

• ID
  rs51259581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55251598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGCTCC AGGTCAAGGC
  GCTTGCCCAC TAGGCTGACC AACTGAGTTC TATTTCCAGG ACTCACATAG TGGAAGGAGA
  TCCAACTCCC ATTTGATCTT CACAAGCGTG CCGCACACAT ATAATAAATA AACTTTTTTT
  TTTAAAAGAC AGAAAAATAC CAAAACTCTT GTAGGTTCTT ACAGTGCTCT GCGCCTCCCA
  R
  TGAACCTTAA ACAGCAAATA AATATCACAG GCAAACCCTC TGTCCCATTT TATGTAGTTC
  CCAAATAGGT AGAAACTAGA ATGTTTCACC CAGAATTCAA GATAGAAAAA GGATTACTCT
  TTTTTGCTTA AAAAAAAAAA ACAAAAAACA AAAAACAAAA AAACAATCAC TTTTATGTAT
  GCCTATGTCT GTATATAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52722761	NES15566851	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51259581					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722761	NES15566851	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55251598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	493 bp proximal
Gm63342	predicted gene, 63342	927 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	1313 bp upstream
Rr369830	regulatory region 369830	944 bp upstream
Rr369831	regulatory region 369831	1163 bp upstream
Rr404108	regulatory region 404108	within coordinates
Rr492392	regulatory region 492392	823 bp proximal
Rr492393	regulatory region 492393	1005 bp proximal
Rr492394	regulatory region 492394	1324 bp proximal
Rr492395	regulatory region 492395	1650 bp proximal
Tssr125743	transcription start site region 125743	1389 bp upstream