rs51265586 SNP Detail

Summary

• ID
  rs51265586
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45048289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTGTAA GTCAGCTCAA
  GGGCTCCTTC CTGTCAGGGT GAGAGCAAGC TTGATAAGGC TTGGTGAGCT AGCTACCTGT
  GTGAAGAAAG GAGCTCTGGG CTGTGGAGAG AGGTTTTAGC TGTGTGAAGG GTTCGAAAAG
  GAAAAAAGTT TGACTTCTGT TCAATCTTCT TGCTGTGTGT GACCTTCTGC TCGCAATTGG
  K
  TTACAATGAC CTCTATAGTT ATAGCACAAA AGGCAGCTCT ACTTGAGGGC TTGTACCTTT
  TGATCTCACC CAGCATTCTG GAGGCAGAGG CAGGCATGCC TTTGTGAATT AAAGGCCAGC
  CTGGTCTGCA CGGTGAGACC CAGGCCATCC TGATCTATAC GGTGAGACCC TGGTGAGACC
  CTGCCATAAA ACAATTAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52631916	NES15456109	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51265586					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52631916	NES15456109	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45048289 () rs orientation: forward

Symbol	Name	Function Class
Jarid2	jumonji and AT-rich interaction domain containing 2	within coordinates
Rr276124	regulatory region 276124	1689 bp distal
Tssr119569	transcription start site region 119569	1610 bp upstream