rs51267875 SNP Detail

Summary

• ID
  rs51267875
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:32968798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCCCCA GGGAAAAGCA
  CACCAACTGG TTATCCAATA CCAAATGGAT TCCTACTATT CTTAAAAATT CCCTTACGAC
  GCATGTTCAC TGGGCTAACA AAGTGCACAG TTGGCAAACA TACTCTTAAA ATAGCTAGAG
  ACCTATTTGC TTTAAAAATG GTCTTCCCAT GGCAAATTAA CCTCTCTGAG TTTGGGTCAT
  M
  CCCATGAGAA CATAAGACAA ATGCCTAGAT TTTAAAAGCA GTTAGGAATA GCAAGTATCC
  CAACTGAGGC TTTCCCTGTG AGACACGTAA AATTCAAAAT GTGAAAGCTG AAGCTAATCC
  TGCCACTGTC CCTTCTGTTT GACAGTGAAA AGGCACCGTA AGTCTGTAAA GACAGGTTTT
  ATTGTTTTCT GTACCCTAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876569	NES15980485	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51267875					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876569	NES15980485	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32968798 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	within coordinates
Gm53279	predicted gene, 53279	within coordinates
Rr149014	regulatory region 149014	1198 bp distal
Tssr60215	transcription start site region 60215	1781 bp downstream