rs51269648 SNP Detail

Summary

• ID
  rs51269648
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136722060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTGCAGC GGTGCCCAGA GGTTTGTCTC CATGGTGGCT
  CTAGGTCTTG TCCAGTTGAC ACTTGTGAAA CTCTGTACAG GGCTTTCAGC CGGCTGCTAT
  K
  TGTATGGGGA AGACGGGCAG AGCTCCCTGG ACCACGGTGT TCAGGGACCC GTGGCTGGCA
  CTGGTGACTT CGGACCTCTG AAAGAGACAA CAGCTACAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144517318	ENSMUSSNP4469572	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51269648					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136722060 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	within coordinates
Myl10	myosin, light chain 10, regulatory	within coordinates
Rr120856	regulatory region 120856	1828 bp proximal
Rr127468	regulatory region 127468	1060 bp distal
Rr127469	regulatory region 127469	60 bp distal
Tssr49256	transcription start site region 49256	1677 bp downstream
Tssr49257	transcription start site region 49257	369 bp downstream
Tssr49258	transcription start site region 49258	236 bp downstream
Tssr49259	transcription start site region 49259	176 bp downstream
Tssr49260	transcription start site region 49260	102 bp downstream
Tssr49261	transcription start site region 49261	390 bp upstream
Tssr49262	transcription start site region 49262	408 bp upstream
Tssr49263	transcription start site region 49263	451 bp upstream
Tssr49264	transcription start site region 49264	461 bp upstream
Tssr49265	transcription start site region 49265	915 bp upstream
Tssr49266	transcription start site region 49266	937 bp upstream
Tssr49267	transcription start site region 49267	1007 bp upstream
Tssr49268	transcription start site region 49268	1985 bp upstream
Tssr49269	transcription start site region 49269	1998 bp upstream