rs51270179 SNP Detail

Summary

• ID
  rs51270179
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153536758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGACTCC CTCTTCTGGT
  GTGTCTGAAG ACAGCTACAG TGTACTTACA TATAATGATA AAATAAATAA AATTTAAAAA
  AAAAAAAAAA AAAAAGAATA CACAGTGTAG AGTTGAGGGG AAGAGAAGAT TTGAGCCCTA
  GAGAAGGATG GACGAGAGAC GACAAATGTC AGTCAGCTAC CCATCAGACA AGTGAGACAG
  T
  TACTGTGACA GATGCCTGGG ATGGAGCAAC TTAAAAAGCC GAGCTGTTCC TGCTCTTGCA
  GGTGTGGCTG CTGTGTCACA TGGATGTCAG TAGGTGGCAG AGGGGAGAGA GGCTATGTCT
  ATGCTGAGTG TTCTGACCTT CAGACATCTG AAGGATTAGT AGCCTAACAT TTCCTGAAAA
  AAAGTGAGCC TGAGACCACC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136113951	ENSMUSSNP1990378	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51270179					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153536758 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	49 bp upstream
Rr587767	regulatory region 587767	511 bp distal
Rr587768	regulatory region 587768	368 bp distal
Rr587769	regulatory region 587769	177 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	83 bp proximal
Rr587772	regulatory region 587772	689 bp proximal