rs51271988 SNP Detail

Summary

• ID
  rs51271988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTAGAT GTTGGGGTGG
  GCCAACTCAA AGTACTGGGT CTGGGCCTGG ATGGAAGCTG AGTTGGTCAG CTTTTTGCCC
  AGGCGAGGGG TAGGGCCAGC TCTTCCAGTT GCTGCATCTG ATGAGAAACA GGGCCAGCTC
  TGCACAGCTC TCAGATGTCA ACATGGCTTC AGGTGACAGT CTAGACCAGG GATGTCTACA
  Y
  CAGAAGCATA CTTTTTATAA TCTTACAGAT TCACTATCTC AAATTTAAAA TGTCACATAT
  TTTAAAAATA ATTGCAAGGA TAGTTGACGA AATACTCACT GAGAACATTG ATTTCAGACA
  AAATCATTTT CCTGTGACCC TTCACATTTA CAGAATTGGG AGGTGCTATT TGAGCAGAAT
  TATAATTTAA TAAGTGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647231	ENSMUSSNP5142123	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss322398745	CHEV_7_117910097	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51271988					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365790 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1623 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	94 bp downstream
Cpgi19579	CpG island 19579	1500 bp proximal
Rr653308	regulatory region 653308	1210 bp proximal
Rr653309	regulatory region 653309	1838 bp proximal
Tssr68503	transcription start site region 68503	1480 bp upstream
Tssr68504	transcription start site region 68504	1523 bp upstream
Tssr68505	transcription start site region 68505	1555 bp upstream
Tssr68506	transcription start site region 68506	1586 bp upstream