rs51272281 SNP Detail

Summary

• ID
  rs51272281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77500424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGACACCT TTTGATTCTT
  ATGTCCTCAT AAAGAAGATT CTCCCTCCCC TGTTTCCCCG CTCTGGCCCT CCTGCCCACA
  AAGTTACATT TCTCTGCACT TTTGTCAGGT TCTGCGTCTT TGTTATTTAA ATATTCGCAG
  TTCCTTGTCT GCTGCTCAAA TTGAGATCTA TGACAAGGAA CTGAATCCCA GCACTGTCCA
  Y
  GCTATAAGCA TATATCGGAT ACTTGACAAA TGAATGAATG AATGAATGAA TGAATGAATG
  AATCTCCAAG GTGTCTTCAG TTTGTACCAT TTTCTGCTTG ATGATCTCAT CGCTTAGTGG
  CATTGGTCCC TTTCCACCAA GATCTGTGAG TTAGTAGTAC GTTAGCCAGG ACAAATTCTC
  TTTAGTTTGT TAATTAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61429602	NES16809160	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs51272281					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429602	NES16809160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77500424 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr14	DNA segment, Chr 9, Derry C. Roopenian 14	746 bp proximal
Rr368830	regulatory region 368830	428 bp downstream
Rr683375	regulatory region 683375	320 bp distal
Rr683376	regulatory region 683376	1832 bp proximal