rs51272456 SNP Detail

Summary

• ID
  rs51272456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191712068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGGGACA TCAGACACCC CAGAATTGAG CCACCATGTG
  GGTGCTGGTC CTCTGCAAGA GCAGCAAGTG CTCTTAGCTG CAGAGCCATC TCTCCAGACC
  R
  GAAATGCTAC ATTTTAAGTT AAAGATGGAA ACAAAGGTTA TACAAGTTCA TCACTTGATT
  CTCCTAGGAC CCCAGGGGTC AGTCCCTGCC GGGGACAGCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60361396	NES15865042	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51272456					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60361396	NES15865042	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191712068 () rs orientation: forward

Symbol	Name	Function Class
Gm70534	predicted gene, 70534	1923 bp upstream
Rd3	retinal degeneration 3	Intron
Rr426278	regulatory region 426278	586 bp distal
Rr426279	regulatory region 426279	1195 bp proximal
Tssr10800	transcription start site region 10800	1848 bp downstream
Tssr10801	transcription start site region 10801	1816 bp downstream