rs51272850 SNP Detail

Summary

• ID
  rs51272850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183830746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAATCAT AGAGTAAATA
  TCTGATAGGC AGGCTGTCTG ATATGTGATC CCTAAGGGGG TCATGGCCCA CAGGCTGAGA
  ACCACTCCTC TAGGATAATA AATGGCATGT GAACATCAAC TACCCCCTCT GTCTGTTTCT
  TTCTCAGATT TCTACTTCAT TGTTCAGTTT TCTCTCCCAG GATGTTAAAG TTAAAATGGC
  Y
  GGCCTTCCTG GTGATTGATT ATTTGAGAAT CTCCTTTATT CCCATAACAA AGTTTTGTTT
  AGTGCCCCTG TGCTCCTGAC ACTGCCCCAG GACTAAGAAA TGACAGAAAT AGATCACACT
  GACACTTGGT GTGATTTATT TATTTAACCC CTACTTTTGT ACTATCTGAC TTATTTTTAT
  TTTTTAAAAT CAGGTGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352498	NES15853285	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51272850					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352498	NES15853285	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183830746 () rs orientation: forward

Symbol	Name	Function Class
Rr425178	regulatory region 425178	1933 bp proximal