rs51273725 SNP Detail

Summary

• ID
  rs51273725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA TGCTCTAGGC ACTGTTCAAA
  Y
  TCCCTTTCTT TGGGTACTGT TTAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148223006	ENSMUSSNP858652	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51273725					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174212 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	473 bp upstream
Tssr744	transcription start site region 744	1037 bp upstream
Tssr745	transcription start site region 745	1080 bp upstream
Tssr746	transcription start site region 746	1091 bp upstream
Tssr747	transcription start site region 747	1104 bp downstream
Tssr748	transcription start site region 748	1125 bp upstream
Tssr749	transcription start site region 749	1157 bp upstream
Tssr750	transcription start site region 750	1170 bp upstream
Tssr751	transcription start site region 751	1224 bp upstream
Tssr752	transcription start site region 752	1293 bp upstream
Tssr753	transcription start site region 753	1300 bp upstream
Tssr754	transcription start site region 754	1972 bp upstream
Tssr21562	transcription start site region 21562	431 bp upstream
Tssr21563	transcription start site region 21563	448 bp upstream
Tssr21564	transcription start site region 21564	467 bp upstream
Tssr21565	transcription start site region 21565	492 bp upstream
Tssr21566	transcription start site region 21566	502 bp upstream
Tssr21567	transcription start site region 21567	516 bp upstream
Tssr21568	transcription start site region 21568	526 bp upstream
Tssr21569	transcription start site region 21569	1003 bp upstream
Tssr21570	transcription start site region 21570	1065 bp upstream
Tssr21571	transcription start site region 21571	1096 bp upstream
Tssr21572	transcription start site region 21572	1113 bp upstream
Tssr21573	transcription start site region 21573	1142 bp upstream
Tssr21574	transcription start site region 21574	1206 bp upstream
Tssr21575	transcription start site region 21575	1984 bp upstream
Tssr21576	transcription start site region 21576	2000 bp upstream
Tssr27433	transcription start site region 27433	1061 bp downstream
Tssr27434	transcription start site region 27434	1084 bp downstream
Tssr27435	transcription start site region 27435	1112 bp downstream
Tssr27436	transcription start site region 27436	1131 bp downstream
Tssr27437	transcription start site region 27437	1152 bp downstream
Tssr27438	transcription start site region 27438	1182 bp downstream
Tssr27439	transcription start site region 27439	1196 bp downstream
Tssr27440	transcription start site region 27440	1206 bp downstream
Tssr27441	transcription start site region 27441	1261 bp downstream
Tssr27442	transcription start site region 27442	1269 bp downstream
Tssr27443	transcription start site region 27443	1332 bp downstream
Tssr27444	transcription start site region 27444	1341 bp downstream
Tssr27445	transcription start site region 27445	1957 bp downstream