rs51273897 SNP Detail

Summary

• ID
  rs51273897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126575742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACAAGAG GATCCCTTCC
  AAGAGATCTT AAAGGGGCTT GTTAAGTCTC AGAACAAAAG CACCTGAGAT GTGTGAGAGG
  GATCTGAAAG CACACAGCGC TTCCTCAGAA CTGTAGATGA GGTTTTCTTG GATTTTCTGT
  ACGTCATTCC TGAAGCCTTG GGAGAGGGGT GGTGAAAGTA GACCACGGGT GTGGTCTACT
  Y
  CTCAATGGTC TTCCAGGACC ATTGAGGAGC CTCTTGCACC AATTGTATCC ACCCCTGCTT
  TTCAATGACC CTGCATTATA CCCTCAGGTA ATCCCTGACC TTCCAGCAGT GGAGCCTCAG
  TGGATTAATG ATAAGCCTTG TCAAACTTAA GCTGTGCAAA GGGGACCTGC CCTGGAGTCC
  TTTCTCATGT TTCCCCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135841112	ENSMUSSNP3276900	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320948070	CHEV_3_126485011	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51273897					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126575742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1703 bp downstream
Tssr31580	transcription start site region 31580			1686 bp downstream
Tssr31581	transcription start site region 31581			1677 bp downstream