rs51276272 SNP Detail

Summary

• ID
  rs51276272
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44439106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG GACTCAGGTA GTCATGTTTG
  G
  TGGCAAATGT CTTTCCTTGT TGAGC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136396669	ENSMUSSNP6819816	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322941051	CHEV_9_44335892	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51276272					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44439106 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	1365 bp upstream
Rr200338	regulatory region 200338	294 bp proximal
Rr206318	regulatory region 206318	1905 bp distal
Rr401337	regulatory region 401337	1018 bp downstream
Tssr89167	transcription start site region 89167	1837 bp upstream
Tssr89168	transcription start site region 89168	1386 bp upstream
Tssr89169	transcription start site region 89169	1369 bp upstream
Tssr89170	transcription start site region 89170	1308 bp upstream
Tssr89171	transcription start site region 89171	1294 bp upstream