rs51276314 SNP Detail

Summary

• ID
  rs51276314
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40554312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTTTGC TGTGCCCCGC
  TGCTTCAGCT TGTCTTTATG GGGAGAATAG GCTCCGTTTA ATTAAGAGGC TTTGGGACTA
  GTGTGGTCTC ACGGTCCTCT AAATTGTTTT AATTACAGTG CAGTTCTTAA TTAGGCATTC
  CACGGTGCAC AAGCATAGCC TCCGAGCCTT TCAAAGCTAC GGTTATATCA CTCTCCTCAT
  W
  GATAAATTAT TGCTCTGTAA AAGTGATGCT GGAGAGAGAG AGTTCATCAG AAGAAAGCCT
  TTAGGTTTGA AATGAAAGGC AAGGTTGGCA GTGCTTGTTT TAGAAGAAGG GGGAGGAGGA
  AGAGGAGGAG GAGGAAGTAA AAAAGAACTC CCCTGTTGAG AAACCGTGTC GAATGTTAAC
  ATTTGGTACA GGAAATTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721435	NES16360430	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51276314					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721435	NES16360430	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40554312 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	236 bp upstream
Rr410075	regulatory region 410075	within coordinates
Rr410076	regulatory region 410076	221 bp proximal
Tssr65	transcription start site region 65	343 bp upstream
Tssr6477	transcription start site region 6477	225 bp upstream
Tssr6478	transcription start site region 6478	290 bp upstream
Tssr6479	transcription start site region 6479	319 bp upstream
Tssr11438	transcription start site region 11438	63 bp downstream
Tssr11439	transcription start site region 11439	1295 bp downstream
Tssr11440	transcription start site region 11440	1305 bp downstream
Tssr11441	transcription start site region 11441	1323 bp downstream
Tssr11442	transcription start site region 11442	1339 bp downstream
Tssr11443	transcription start site region 11443	1370 bp downstream