rs51276566 SNP Detail

Summary

• ID
  rs51276566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79211597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCATCC TGCCTATGAA
  ACAACAGCAA AGCAGGGAGC TTGTACAGGG CCACACTGGT CACCAAGCCT TGTCTTCTAC
  ATCTTCTCAT TCAAATACTG AGCCTCGTGG CAGTCACTAA TGTGGGCAGA AAATTCAGTC
  CTATCTGGCA CAGTGAGAAA ACAGACAAGA ACAGAGCATG GCCTCCAAGC TCCAGAACCA
  Y
  GTGAAGGCAG AGACCAGAAC AAAACACTGC ACTAGTCTAA GGGTGGAGCT TCAACGAGGC
  CAAACCAAAC CTGCCCAATC CTGTCGGGCT GGCAAGAGGG CAGGTGGGGG AACTTTAGAG
  GAAGGATTGG TATTTGTTTG CGATCATGTG AACTGCCCAT TAAAAATACA GGCAGAGATC
  CATAAACCCT TGTGCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148197509	ENSMUSSNP992733	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs51276566					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79211597 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	230 bp upstream
Cpgi7329	CpG island 7329	402 bp proximal
Pla2g6	phospholipase A2, group VI	within coordinates
Rr404497	regulatory region 404497	824 bp upstream
Rr505593	regulatory region 505593	within coordinates
Rr505594	regulatory region 505594	323 bp proximal
Rr505595	regulatory region 505595	557 bp proximal
Tssr132082	transcription start site region 132082	186 bp upstream
Tssr135328	transcription start site region 135328	729 bp downstream
Tssr135329	transcription start site region 135329	757 bp downstream
Tssr135330	transcription start site region 135330	804 bp downstream