rs51276718 SNP Detail

Summary

• ID
  rs51276718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCTATGCT CCCTGCACTC CTGGAACTGC TTCCAAGCAA
  GTGGCTGTCT CCTCTGCAGC CCTGTCCCAA GCCCTCAACA CCACGGTGCT GCAGGGCATG
  R
  CCGGCCAGTC CTTGAGGGTG TCATGTACTT ATGACGCCTT GAAGCACTGG GGGAGACGCA
  AGGCCTGGTG TCGGCAGCTG GGTGAGGAGG GCCCATGCCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss62767919	NES17350334	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs51276718					SNP	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767919	NES17350334	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655526 () rs orientation: forward

Symbol	Name	Function Class
Rr335234	regulatory region 335234	1525 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145096	transcription start site region 145096	1972 bp downstream
Tssr145097	transcription start site region 145097	967 bp downstream
Tssr145098	transcription start site region 145098	625 bp downstream
Tssr145099	transcription start site region 145099	within coordinates
Tssr145100	transcription start site region 145100	11 bp upstream
Tssr145101	transcription start site region 145101	48 bp upstream
Tssr145102	transcription start site region 145102	147 bp upstream
Tssr148525	transcription start site region 148525	192 bp downstream