rs51277632 SNP Detail

Summary

• ID
  rs51277632
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148781526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAAATTA ATTAAAGCTG
  ATTTCTCTGT GACTGCAAAC TGGTCCTATT CTCTGCCCCC CCCCACTCCC TCCTGCTCAT
  CCTCCTATGA AGTCATCTAT CTACACTCAG TGTGACACTT CTGTCTCTGG TATTCTCAAG
  AACGGCAATG TTTGACAATT GTGAAGCCGG CAATATTTTG GAGAGCAGCT GACAATGGCT
  S
  GGTGGTATTA TGCTTCGCCC AAACCCTTTA TGGTATAAAG ATAAAGAACA GCTTCTAGGC
  ATTTGCTTTG TAATTATCTG AAATAATAAC ATGGACAAAT TATATATATT GTTCCTGTGG
  GTTCCCTCCC CTCTTGAATG GCTCCACCCA CTTGATTAGA GCTTACAAAC AATTCATCAA
  ACTTAAAATT TTTGTTTATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61098103	NES16608721	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs51277632					SNP	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098103	NES16608721	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148781526 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	within coordinates
Rr587253	regulatory region 587253	1171 bp proximal
Tssr36091	transcription start site region 36091	1199 bp downstream
Tssr36092	transcription start site region 36092	1224 bp downstream
Tssr36093	transcription start site region 36093	1261 bp downstream
Tssr36094	transcription start site region 36094	1289 bp downstream
Tssr36095	transcription start site region 36095	1346 bp downstream
Tssr36096	transcription start site region 36096	1451 bp downstream