rs51278809 SNP Detail

Summary

• ID
  rs51278809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86235347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGACAGCT AACCTAATGA
  AAAGGTTGAC TTTGCCTTCC CATATGATTC AGTTCATACA GTAGAATGAT TCCCACACAG
  TAACCGTCTG CCAGTTGTCC CAACCTCAGG CAGCATGCGA TCTCTCGTCT AAACTCAGAG
  AGTCCCACTA GGTGATGGGG CCTTCCCTGA CCAGCATGCC AAGTTCCTTT TGGAACAAAG
  Y
  AGAGCTTCCT GCAAAGCTCA AAAGTCTCAG GGAATGCTGA CTTGGCAAGG TAACTACTTT
  AAAGGAAATG GAGTTTCCCC TGGCCGAATA TGTTTTGTAA TCCCAGATTT AAAGACGTTT
  TCCCTCACTA TCCAATCAGG CATATTTACT AATTTACTGC TCCCTGTCCA CTGAAGGCCC
  TACTCATGTT AATCGTTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60286292	NES15785367	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	C		C
ss325489986	CHEV_17_86327259	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51278809					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60286292	NES15785367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86235347 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	within coordinates
Rr532331	regulatory region 532331	385 bp proximal
Rr532332	regulatory region 532332	617 bp proximal
Rr532333	regulatory region 532333	1915 bp proximal
Tssr149724	transcription start site region 149724	644 bp downstream